MRIQC: individual T1w report

Summary

  • BIDS filename: sub-1003_T1w.
  • Date and time: 2020-01-23, 00:36.
  • MRIQC version: 0.15.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.7487177979976586
cnr1.8802159252673378
efc0.646183783454951
fber1555.87646484375
fwhmavg4.257106666666666
fwhmx3.98951
fwhmy4.52991
fwhmz4.2519
icvscsf0.2041109521190505
icvsgm0.4188692032595665
icvswm0.377019844621383
inumed1.4093481302261353
inurange0.6549642324447631
qi15.654731277999835e-05
qi20.004065946563573232
rpvecsf27.023697553089868
rpvegm13.72502259662316
rpvewm17.984082530845622
sizex192
sizey224
sizez224
snrcsf2.7877902229755263
snrgm9.331791670024401
snrtotal9.700613671466312
snrwm16.98225912139901
snrdcsf41.79850999957371
snrdgm87.8328604647333
snrdtotal79.718930766577
snrdwm109.52542183542398
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk410.6571680089338
summarybgmad5.981762409210205
summarybgmean18.294315338134766
summarybgmedian15.959592819213867
summarybgn1770769.0
summarybgp057.987447738647461
summarybgp9539.18512344360342
summarybgstdv15.626018524169922
summarycsfk-0.5520828644860951
summarycsfmad153.1761932373047
summarycsfmean388.9097595214844
summarycsfmedian381.6438293457031
summarycsfn15361.0
summarycsfp05186.32949829101562
summarycsfp95626.5635986328125
summarycsfstdv136.8938751220703
summarygmk-0.6072652572868602
summarygmmad96.48470306396484
summarygmmean802.5079956054688
summarygmmedian801.9632568359375
summarygmn19072.0
summarygmp05663.9174133300781
summarygmp95940.6286895751953
summarygmstdv85.93657684326172
summarywmk1.06626064093426
summarywmmad51.810272216796875
summarywmmean1005.4756469726562
summarywmmedian1000.0285034179688
summarywmn166489.0
summarywmp05917.8866088867187
summarywmp951112.484912109375
summarywmstdv58.88648223876953
tpmoverlapcsf0.22829054296016693
tpmoverlapgm0.49880102276802063
tpmoverlapwm0.5356221795082092
wm2max0.5474457913973277
AcquisitionMatrixPE224
AcquisitionNumber1
AcquisitionTime12:27:17.277500
BaseResolution224
BodyPartExaminedBRAIN
CoilStringHE1-4;NE1_2
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190410 GCC6.3.0
DeviceSerialNumber166048
DwellTime1.06e-05
EchoTime0.00217
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'FM3', '2', 'FIL']
ImagingFrequency123.246
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressNorth_13th_1701_Philadelphia_PA_US_19122
InstitutionNameTemple_University_-_Weiss_Hall
InstitutionalDepartmentNameDepartment
InversionTime1.15
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingSteps223
PhaseResolution1
PixelBandwidth210
ProcedureStepDescriptionSmith_Lab_Smith_iStart
ProtocolNameT1w-anat_mpg_07sag_iso
PulseSequenceDetails%SiemensSeq%_tfl
ReceiveCoilActiveElementsHE1-4;NE1,2
ReceiveCoilNameHeadNeck_20
ReconMatrixPE224
RefLinesPE32
RepetitionTime2.4
SAR0.0577515
ScanOptionsIR_WE
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptionT1w-anat_mpg_07sag_iso
SeriesNumber4
ShimSetting[1427, -7474, 6471, -155, -12, -11, 68, 4]
SliceThickness1
SoftwareVersionssyngo_MR_E11
StationNameAWP166048
TxRefAmp308.386
md5sum0689cdd88a4f33835488e6e108794fdf
softwaremriqc
version0.15.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.